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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
476
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
single cell RNA-seq
Assay category
476
DNA binding
10
DNA accessibility
7
DNA methylation
Target of assay
308
transcription factor
88
histone
88
histone modification
82
recombinant protein
77
control
58
RNA binding protein
50
broad histone mark
38
narrow histone mark
22
chromatin remodeller
5
other context
5
other post-translational modification
Date released
697
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
314
October, 2019
218
June, 2019
213
August, 2021
204
February, 2023
166
May, 2022
120
July, 2018
120
May, 2019
105
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
76
October, 2018
72
September, 2018
64
March, 2020
61
November, 2019
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
September, 2020
16
January, 2021
16
November, 2020
12
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
7
December, 2019
6
April, 2018
5
March, 2019
5
March, 2023
4
October, 2022
1
August, 2018
1
August, 2022
Available data
479
bam
414
bigWig
411
fastq
386
bed narrowPeak
385
bigBed narrowPeak
79
bed broadPeak
78
tagAlign
73
bigBed broadPeak
9
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
3
tar
Organism
493
Homo sapiens
Biosample type
376
cell line
108
tissue
9
primary cell
Organ
368
liver
93
brain
15
blood
15
bodily fluid
9
spleen
7
pancreas
6
epithelium
6
vasculature
3
blood vessel
1
adipose tissue
1
connective tissue
Project
493
AMP
Genome assembly (visualization)
359
GRCh38
352
hg19
Lab
493
AMP-T2D consortium
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
493 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
cell line
HepG2
360
1
GM12878
15
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 8 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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