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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1018
total RNA-seq
865
ChIP-seq
232
ATAC-seq
175
DNase-seq
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
21
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1034
Transcription
865
DNA binding
439
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
591
histone modification
590
histone
307
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
539
February, 2021
284
August, 2017
221
October, 2019
193
May, 2020
160
June, 2019
123
August, 2021
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
65
May, 2022
63
February, 2023
48
December, 2017
40
March, 2020
40
May, 2021
40
November, 2019
26
November, 2018
24
February, 2020
23
October, 2017
12
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
Available data
1904
bam
1729
bigWig
968
tsv
914
bed narrowPeak
558
bigBed narrowPeak
377
fastq
238
tagAlign
210
bed broadPeak
202
bed bed3+
173
bigBed broadPeak
144
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2498
Homo sapiens
Biosample type
2507
tissue
896
primary cell
662
cell line
392
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
360
liver
265
brain
235
kidney
180
heart
158
bone element
127
blood vessel
127
vasculature
122
limb
81
musculature of body
71
artery
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2466
AMP
31
T1D
10
LungMap
Genome assembly (visualization)
1816
GRCh38
1725
hg19
Lab
2262
AMP-T2D consortium
131
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
single cell RNA-seq
organ_slims!
eye
BIOSAMPLE
ASSAY
2507 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
284
69
67
1
7
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
2
3
1
1
1
1
kidney
49
27
75
13
6
1
1
1
bone element
84
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