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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
399
total RNA-seq
73
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
1
RRBS
Assay category
402
Transcription
73
DNA binding
8
DNA accessibility
7
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
14
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
443
bam
426
bigWig
402
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed bedMethyl
3
bed broadPeak
3
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
492
Homo sapiens
Biosample type
489
tissue
3
primary cell
1
in vitro differentiated cells
Organ
866
pancreas
790
liver
680
connective tissue
491
adipose tissue
454
epithelium
300
heart
290
kidney
283
brain
230
vasculature
224
blood vessel
159
bone element
139
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
493
AMP
Genome assembly (visualization)
428
hg19
425
GRCh38
Lab
493
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
single cell RNA-seq
organ_slims!
lymph node
BIOSAMPLE
ASSAY
493 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
2
white adipose tissue
12
+ See 3 more…
primary cell
mesenchymal stem cell of adipose
1
1
pericardium fibroblast
1
in vitro differentiated cells
white fat cell
1
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