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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
6
Hi-C
5
RRBS
2
total RNA-seq
1
pCHi-C
single cell RNA-seq
1
snATAC-seq
Assay category
12
DNA binding
6
3D chromatin structure
5
DNA methylation
2
Transcription
1
DNA accessibility
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
13
August, 2017
5
July, 2019
3
March, 2020
2
February, 2020
2
June, 2019
1
May, 2019
1
May, 2022
Available data
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
27
Homo sapiens
Biosample type
24
tissue
3
primary cell
Organ
323
pancreas
223
epithelium
168
liver
159
kidney
114
connective tissue
101
bone element
76
heart
75
vasculature
74
blood vessel
66
adipose tissue
64
brain
55
eye
54
artery
31
limb
27
musculature of body
16
skeleton
14
blood
14
bodily fluid
12
nerve
11
lung
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
27
AMP
Genome assembly (visualization)
6
hg19
Lab
27
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
single cell RNA-seq
organ_slims!
pericardium
files.file_type!
bigWig
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
pCHi-C
snATAC-seq
tissue
skeletal muscle tissue
9
4
1
gastrocnemius medialis
4
1
psoas muscle
2
1
left ventricle myocardium
1
muscle of leg
1
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
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