Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
907
ChIP-seq
260
ATAC-seq
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
24
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
1047
Transcription
907
DNA binding
294
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
539
February, 2021
284
August, 2017
238
October, 2019
193
May, 2020
123
August, 2021
120
July, 2018
115
May, 2019
94
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
65
May, 2022
48
December, 2017
40
May, 2021
40
May, 2024
40
November, 2019
39
March, 2020
25
February, 2020
23
October, 2017
17
November, 2018
12
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
Available data
1901
bam
1766
bigWig
984
bed narrowPeak
966
tsv
561
bigBed narrowPeak
371
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
bigBed broadPeak
144
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2411
Homo sapiens
Biosample type
2420
tissue
852
primary cell
603
cell line
391
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
493
pancreas
486
adipose tissue
357
liver
238
brain
193
heart
167
kidney
158
bone element
122
blood vessel
122
vasculature
86
limb
67
artery
53
eye
49
musculature of body
41
nerve
24
spleen
16
skeleton
15
epithelium
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2379
AMP
31
T1D
10
LungMap
Genome assembly (visualization)
1677
GRCh38
1589
hg19
Lab
2135
AMP-T2D consortium
131
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
10
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
single cell RNA-seq
organ_slims!
small intestine
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
2420 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
292
71
68
7
4
3
1
1
4
1
adipose tissue
382
2
3
3
1
liver
167
145
20
3
1
1
1
1
kidney
49
27
75
6
1
1
1
bone element
84
+ See 152 more…
See all biosamples
Download