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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
single cell RNA-seq
5
Hi-C
3
total RNA-seq
1
pCHi-C
Assay category
35
DNA accessibility
5
3D chromatin structure
3
Transcription
Date released
35
February, 2023
3
February, 2020
3
March, 2020
2
July, 2019
1
October, 2019
Available data
bam
150
bigWig
129
bed narrowPeak
79
bigBed narrowPeak
62
tsv
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
44
Homo sapiens
Biosample type
40
tissue
4
primary cell
Organ
257
pancreas
207
epithelium
146
kidney
109
liver
93
bone element
91
connective tissue
89
heart
54
eye
49
adipose tissue
45
vasculature
44
blood vessel
43
brain
38
musculature of body
37
artery
11
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
44
AMP
Genome assembly (visualization)
35
GRCh38
5
hg19
Lab
44
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
single cell RNA-seq
files.file_type!
bam
BIOSAMPLE
ASSAY
44 results
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Clear Filters
ATAC-seq
Hi-C
total RNA-seq
pCHi-C
tissue
coronary artery
35
1
aorta
1
1
ascending aorta
1
tibial artery
1
primary cell
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
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