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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
84
RNA microarray
79
total RNA-seq
32
DNase-seq
16
ATAC-seq
4
small RNA-seq
3
Hi-C
3
pCHi-C
single cell RNA-seq
2
RRBS
1
FAIRE-seq
Assay category
218
DNA binding
83
Transcription
49
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
150
February, 2021
91
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
16
October, 2017
15
July, 2019
12
February, 2020
9
February, 2023
2
March, 2020
2
November, 2018
1
May, 2021
Available data
306
bam
277
bigWig
211
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
88
txt
81
tsv
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
21
fastq
5
bed bed3
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
442
Homo sapiens
Biosample type
423
tissue
19
primary cell
Organ
872
pancreas
790
liver
680
connective tissue
491
adipose tissue
454
epithelium
290
kidney
283
brain
260
heart
230
vasculature
224
blood vessel
159
bone element
139
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
441
AMP
1
T1D
Genome assembly (visualization)
280
GRCh38
231
hg19
Lab
441
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
87
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
442 results
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ChIP-seq
RNA microarray
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
pCHi-C
RRBS
FAIRE-seq
tissue
bone element
84
bone tissue
58
brain
20
1
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
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primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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