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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
72
ChIP-seq
single cell RNA-seq
32
ATAC-seq
6
WGBS
Assay category
81
Transcription
72
DNA binding
32
DNA accessibility
6
DNA methylation
Target of assay
51
histone
51
histone modification
28
narrow histone mark
23
broad histone mark
17
control
4
RNA binding protein
4
transcription factor
1
chromatin remodeller
Date released
61
September, 2018
37
February, 2023
29
August, 2017
19
December, 2017
19
September, 2020
7
August, 2020
6
February, 2021
6
November, 2017
5
September, 2017
2
October, 2018
Available data
243
bam
228
bigWig
191
fastq
148
bed narrowPeak
86
tsv
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
18
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
3
tagAlign
2
hdf5
1
tar
Organism
191
Homo sapiens
Biosample type
172
primary cell
19
in vitro differentiated cells
Organ
465
liver
396
pancreas
191
epithelium
98
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
122
AMP
69
HPAP
Genome assembly (visualization)
115
GRCh38
107
hg19
Lab
122
AMP-T2D consortium
69
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
assay_title!
single cell RNA-seq
month_released!
August, 2021
BIOSAMPLE
ASSAY
191 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
primary cell
pancreatic alpha cell
52
13
13
6
pancreatic beta cell
21
13
10
pancreatic ductal cell
4
13
4
pancreatic acinar cell
4
8
5
brain microvascular endothelial cell
3
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in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
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