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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
43
ATAC-seq
20
ChIP-seq
3
Hi-C
3
pCHi-C
3
total RNA-seq
2
RRBS
2
WGBS
Assay category
43
DNA accessibility
20
DNA binding
4
DNA methylation
3
3D chromatin structure
3
Transcription
Target of assay
20
control
Date released
35
February, 2023
10
April, 2019
10
February, 2021
6
May, 2019
5
March, 2020
4
July, 2019
3
February, 2020
2
June, 2019
1
October, 2019
Available data
211
bam
bigWig
151
bed narrowPeak
94
bigBed narrowPeak
76
tsv
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
76
Homo sapiens
Biosample type
63
tissue
10
cell line
3
primary cell
Organ
323
pancreas
223
epithelium
168
liver
159
kidney
114
connective tissue
101
bone element
76
heart
75
vasculature
74
blood vessel
66
adipose tissue
64
brain
55
eye
54
artery
31
limb
27
musculature of body
16
skeleton
14
blood
14
bodily fluid
12
nerve
11
lung
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
76
AMP
Genome assembly (visualization)
43
GRCh38
13
hg19
Lab
76
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
single cell RNA-seq
files.file_type!
bigWig
BIOSAMPLE
ASSAY
76 results
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ATAC-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
RRBS
WGBS
tissue
coronary artery
35
2
1
heart left ventricle
6
1
1
1
2
heart right ventricle
2
1
1
right atrium auricular region
3
1
heart
2
1
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cell line
smooth muscle cell of the coronary artery
8
2
primary cell
cardiac fibroblast
2
1
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