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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
DNase-seq
4
Hi-C
1
WGBS
Assay category
12
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Date released
June, 2019
10
October, 2019
6
February, 2021
5
July, 2019
3
February, 2020
Available data
17
bam
12
bed narrowPeak
11
bigWig
7
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
24
Homo sapiens
Biosample type
24
tissue
Organ
650
pancreas
521
connective tissue
417
adipose tissue
311
epithelium
236
liver
160
kidney
159
bone element
136
heart
121
vasculature
120
blood vessel
103
artery
52
eye
35
brain
24
limb
23
musculature of body
16
skeleton
15
embryo
11
lung
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
24
AMP
Genome assembly (visualization)
17
GRCh38
16
hg19
Lab
24
AMP-T2D consortium
assay_title!
single cell RNA-seq
ChIP-seq
month_released!
June, 2019
BIOSAMPLE
ASSAY
24 results
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ATAC-seq
total RNA-seq
DNase-seq
Hi-C
WGBS
tissue
tibial nerve
1
5
2
gastrocnemius medialis
1
4
tibial artery
1
1
2
distal epiphysis of femur
1
distal epiphysis of humerus
1
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