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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
40
DNase-seq
36
ATAC-seq
26
total RNA-seq
4
Hi-C
4
pCHi-C
1
RRBS
1
WGBS
Assay category
76
DNA accessibility
70
DNA binding
26
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
52
histone
52
histone modification
34
broad histone mark
18
control
18
narrow histone mark
1
RNA binding protein
transcription factor
Date released
90
October, 2019
38
June, 2019
31
February, 2023
7
May, 2019
6
February, 2021
6
July, 2019
4
February, 2020
Available data
124
bed narrowPeak
120
bam
96
bigWig
89
bigBed narrowPeak
40
bed bed3+
40
bed broadPeak
40
bigBed broadPeak
12
tsv
2
bed bedMethyl
2
bigBed bedMethyl
Organism
182
Homo sapiens
Biosample type
178
tissue
4
primary cell
Organ
853
pancreas
640
connective tissue
474
adipose tissue
452
liver
445
epithelium
283
heart
280
brain
280
kidney
221
vasculature
216
blood vessel
159
bone element
134
artery
122
limb
95
musculature of body
60
eye
43
nerve
34
embryo
22
vein
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
182
AMP
Genome assembly (visualization)
129
hg19
101
GRCh38
Lab
182
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
single cell RNA-seq
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
182 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
RRBS
WGBS
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
islet of Langerhans
3
1
14
4
muscle of leg
7
13
1
retina
3
15
3
+ See 11 more…
primary cell
retinal pigment epithelial cell
2
1
1
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