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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
7
ChIP-seq
6
ATAC-seq
4
Hi-C
3
total RNA-seq
1
WGBS
1
pCHi-C
Assay category
38
DNA accessibility
7
DNA binding
4
3D chromatin structure
3
Transcription
1
DNA methylation
Target of assay
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
1
control
Date released
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
March, 2020
Available data
46
bam
44
bed narrowPeak
39
bigWig
38
bigBed narrowPeak
32
bed bed3+
32
bed broadPeak
32
bigBed broadPeak
4
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
54
Homo sapiens
Biosample type
54
tissue
Organ
854
pancreas
783
liver
676
connective tissue
490
adipose tissue
419
epithelium
292
heart
260
kidney
197
brain
183
vasculature
177
blood vessel
159
bone element
113
artery
95
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
18
ureter
16
skeleton
11
lung
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
54
AMP
Genome assembly (visualization)
44
GRCh38
44
hg19
Lab
54
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
single cell RNA-seq
month_released!
October, 2019
BIOSAMPLE
ASSAY
54 results
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DNase-seq
ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
WGBS
pCHi-C
tissue
muscle of leg
13
7
1
muscle of arm
17
gastrocnemius medialis
4
1
bladder (urinary bladder)
1
distal epiphysis of femur
1
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