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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
single cell RNA-seq
1
snATAC-seq
Assay category
12
DNA binding
8
Transcription
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
13
August, 2017
10
July, 2019
5
March, 2020
2
February, 2020
2
June, 2019
1
January, 2018
1
May, 2019
1
May, 2022
Available data
68
bigWig
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
35
Homo sapiens
Biosample type
30
tissue
5
primary cell
Organ
658
pancreas
605
connective tissue
478
adipose tissue
349
liver
303
epithelium
151
bone element
109
heart
107
kidney
97
vasculature
95
blood vessel
80
brain
65
artery
35
musculature of body
30
limb
28
eye
23
embryo
16
nerve
15
blood
15
bodily fluid
11
lung
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
35
AMP
Genome assembly (visualization)
13
hg19
7
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
single cell RNA-seq
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
snATAC-seq
tissue
skeletal muscle tissue
9
1
4
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
muscle of leg
1
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
1
1
1
skeletal muscle cell
1
1
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