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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
6
Hi-C
5
RRBS
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
35
DNA accessibility
6
3D chromatin structure
6
DNA methylation
6
Transcription
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
10
July, 2019
7
May, 2019
5
March, 2020
February, 2020
1
January, 2018
1
May, 2022
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
7
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
93
Homo sapiens
Biosample type
79
tissue
14
primary cell
Organ
871
pancreas
789
liver
678
connective tissue
489
adipose tissue
454
epithelium
290
kidney
271
brain
257
heart
227
vasculature
221
blood vessel
159
bone element
137
artery
119
limb
93
musculature of body
69
blood
69
bodily fluid
60
eye
42
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
93
AMP
Genome assembly (visualization)
73
hg19
53
GRCh38
Lab
93
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
single cell RNA-seq
month_released!
February, 2020
BIOSAMPLE
ASSAY
93 results
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ChIP-seq
DNase-seq
Hi-C
RRBS
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
pCHi-C
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
psoas muscle
2
2
1
gastrocnemius medialis
4
+ See 2 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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