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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
36
DNase-seq
8
ATAC-seq
total RNA-seq
4
Hi-C
1
WGBS
Assay category
66
DNA binding
44
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
65
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
Available data
110
bam
92
bed narrowPeak
87
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
115
Homo sapiens
Biosample type
115
tissue
Organ
557
liver
392
pancreas
288
epithelium
280
heart
265
brain
202
connective tissue
175
vasculature
169
blood vessel
151
kidney
115
limb
96
bone element
90
adipose tissue
88
musculature of body
85
artery
61
blood
61
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
thymus
1
urinary bladder
Project
115
AMP
Genome assembly (visualization)
92
GRCh38
92
hg19
Lab
115
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
small RNA-seq
total RNA-seq
BIOSAMPLE
ASSAY
115 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
tissue
tibial nerve
35
2
1
tibial artery
23
2
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
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