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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
6
WGBS
5
ATAC-seq
3
pCHi-C
small RNA-seq
2
DNase-seq
1
RNA microarray
Assay category
398
Transcription
73
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
9
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2021
1
May, 2023
1
November, 2018
1
October, 2017
1
October, 2019
Available data
438
bam
422
bigWig
398
tsv
44
fastq
12
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
487
Homo sapiens
Biosample type
485
tissue
2
primary cell
1
in vitro differentiated cells
Organ
863
pancreas
787
liver
662
connective tissue
487
adipose tissue
433
epithelium
386
heart
330
kidney
279
brain
235
vasculature
230
blood vessel
141
artery
121
limb
85
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
487
AMP
1
T1D
Genome assembly (visualization)
422
hg19
420
GRCh38
Lab
487
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
small RNA-seq
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
488 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
pCHi-C
DNase-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
2
white adipose tissue
12
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primary cell
megakaryocyte
1
mesenchymal stem cell of adipose
1
in vitro differentiated cells
white fat cell
1
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