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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
163
ChIP-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
434
Transcription
288
DNA accessibility
163
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
235
histone
235
histone modification
121
broad histone mark
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
154
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2020
58
September, 2018
48
February, 2021
48
July, 2018
44
June, 2019
43
April, 2018
36
August, 2017
29
July, 2019
25
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
August, 2021
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
503
bam
498
bigWig
368
fastq
268
tsv
190
bed narrowPeak
153
zippedFastqFolder
82
bigBed narrowPeak
52
tagAlign
40
bed broadPeak
40
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
970
Homo sapiens
Biosample type
2436
tissue
970
primary cell
642
cell line
339
in vitro differentiated cells
9
stem cell
Organ
371
epithelium
315
pancreas
34
connective tissue
31
kidney
29
vasculature
24
blood vessel
18
brain
16
vein
12
liver
11
heart
9
musculature of body
8
blood
8
bodily fluid
4
eye
2
artery
1
adipose tissue
1
bone element
1
bone marrow
1
pericardium
Project
481
AMP
324
HPAP
164
T1D
1
ITG
Genome assembly (visualization)
513
hg19
431
GRCh38
Lab
456
AMP-T2D consortium
324
Klaus Kaestner, Upenn
189
Kyle Gaulton, UCSD
1
ITG
Audit category:
45
inconsistent ontology term
31
audit script error
Audit category:
21
missing controlled_by
Audit category:
inconsistent assembly
assay_title!
small RNA-seq
audit.WARNING.category!
inconsistent assembly
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
970 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
9
31
1
Langerhans cell
85
48
monocyte
54
15
44
1
1
pancreatic beta cell
21
23
12
9
16
1
exocrine cell
39
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