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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
729
ChIP-seq
180
DNase-seq
5
ATAC-seq
4
FAIRE-seq
Assay category
729
DNA binding
189
DNA accessibility
Target of assay
384
transcription factor
340
histone
340
histone modification
219
broad histone mark
121
narrow histone mark
81
RNA binding protein
81
recombinant protein
27
chromatin remodeller
5
other context
5
other post-translational modification
Date released
296
November, 2017
163
June, 2019
93
May, 2019
71
November, 2018
64
April, 2019
57
October, 2019
50
December, 2017
45
October, 2018
30
December, 2018
23
August, 2017
21
January, 2019
3
October, 2017
2
July, 2019
Available data
2723
bam
2498
bigWig
1506
bed narrowPeak
1314
tsv
918
bigBed narrowPeak
904
fastq
294
tagAlign
271
bed broadPeak
236
bigBed broadPeak
222
bed bed3+
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
912
Homo sapiens
Biosample type
558
tissue
343
cell line
primary cell
17
in vitro differentiated cells
Organ
344
liver
113
brain
88
heart
88
kidney
84
limb
69
pancreas
62
blood vessel
62
vasculature
54
blood
54
bodily fluid
38
musculature of body
26
nerve
25
artery
18
ureter
15
epithelium
13
connective tissue
13
spleen
10
adipose tissue
3
eye
Project
918
AMP
Genome assembly (visualization)
885
GRCh38
846
hg19
Lab
918
AMP-T2D consortium
Audit category:
28
inconsistent control
1
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
25
inconsistent control read length
2
inconsistent control run_type
1
inconsistent assembly
assay_title!
small RNA-seq
biosample_type!
primary cell
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
918 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
tibial nerve
24
2
+ See 53 more…
cell line
HepG2
281
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
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