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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
187
single cell RNA-seq
small RNA-seq
Assay category
434
Transcription
288
DNA accessibility
279
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
76
February, 2023
56
September, 2020
55
May, 2021
48
July, 2018
47
May, 2020
43
April, 2018
33
May, 2022
27
September, 2018
16
July, 2019
13
February, 2021
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
2
October, 2019
1
November, 2018
Available data
252
bigWig
250
bam
250
tsv
248
fastq
52
zippedFastqFolder
2
bed bed3+
2
csv
Organism
434
Homo sapiens
Biosample type
1211
tissue
434
primary cell
138
in vitro differentiated cells
115
cell line
2
stem cell
Organ
163
epithelium
155
pancreas
14
connective tissue
6
kidney
5
liver
4
heart
3
brain
2
artery
2
blood vessel
2
vasculature
1
adipose tissue
1
musculature of body
1
pericardium
Project
177
HPAP
161
AMP
96
T1D
Genome assembly (visualization)
252
hg19
250
GRCh38
Lab
177
Klaus Kaestner, Upenn
159
AMP-T2D consortium
98
Kyle Gaulton, UCSD
Audit category:
11
inconsistent ontology term
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
434 results
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total RNA-seq
single cell RNA-seq
primary cell
Langerhans cell
85
pancreatic alpha cell
52
12
monocyte
54
exocrine cell
39
pancreatic beta cell
21
12
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