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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
93
single cell RNA-seq
39
ATAC-seq
15
total RNA-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
small RNA-seq
Assay category
123
DNA binding
108
Transcription
39
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
36
February, 2023
21
May, 2019
19
July, 2019
8
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
Available data
173
bed narrowPeak
156
bigWig
131
bam
110
tsv
88
bigBed narrowPeak
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
285
Homo sapiens
Biosample type
285
tissue
66
cell line
10
primary cell
1
in vitro differentiated cells
Organ
539
connective tissue
480
adipose tissue
476
pancreas
352
liver
285
heart
234
brain
230
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
48
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
285
AMP
Genome assembly (visualization)
163
GRCh38
87
hg19
Lab
245
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
assay_title!
small RNA-seq
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
285 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
RRBS
tissue
heart left ventricle
35
18
2
3
4
1
1
1
left cardiac atrium
40
18
coronary artery
5
36
1
heart right ventricle
13
17
1
2
1
1
right cardiac atrium
6
18
1
1
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