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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
582
ChIP-seq
260
ATAC-seq
174
single cell RNA-seq
87
RNA microarray
27
WGBS
27
snATAC-seq
25
pCHi-C
16
Hi-C
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
1211
Transcription
582
DNA binding
293
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
616
histone modification
615
histone
318
narrow histone mark
broad histone mark
184
control
81
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
199
October, 2019
193
May, 2020
191
August, 2017
120
July, 2018
95
February, 2023
65
May, 2022
61
July, 2019
59
May, 2019
55
October, 2018
47
September, 2023
45
December, 2017
43
April, 2019
40
March, 2020
40
May, 2021
40
November, 2017
40
November, 2019
25
February, 2020
20
May, 2024
19
April, 2020
17
November, 2018
15
May, 2023
13
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
5
March, 2019
4
November, 2020
4
September, 2017
3
December, 2019
3
January, 2019
2
January, 2018
1
August, 2022
Available data
1669
bam
1503
bigWig
1060
tsv
731
bed narrowPeak
357
bigBed narrowPeak
332
fastq
bed bed3+
193
bed broadPeak
176
bigBed broadPeak
162
tagAlign
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2254
Homo sapiens
Biosample type
2259
tissue
928
primary cell
640
cell line
317
in vitro differentiated cells
7
stem cell
Organ
519
connective tissue
460
adipose tissue
441
pancreas
327
liver
228
heart
220
kidney
164
brain
158
bone element
92
blood vessel
92
vasculature
55
artery
53
eye
52
limb
32
musculature of body
25
nerve
20
lung
20
spleen
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2162
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1403
GRCh38
1358
hg19
Lab
1927
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
9
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
small RNA-seq
files.file_type!
bed bed3+
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
2259 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
298
42
68
7
4
3
1
1
4
1
adipose tissue
382
2
3
3
1
liver
167
120
20
1
3
1
1
1
kidney
49
17
75
64
6
1
1
1
bone element
84
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