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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
924
total RNA-seq
867
ChIP-seq
178
DNase-seq
125
ATAC-seq
107
single cell RNA-seq
87
RNA microarray
24
pCHi-C
15
WGBS
9
Hi-C
5
RRBS
3
snDrop-seq
2
FAIRE-seq
2
snATAC-seq
Assay category
1031
Transcription
867
DNA binding
307
DNA accessibility
20
DNA methylation
9
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
185
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
284
August, 2017
242
October, 2019
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
99
August, 2021
82
November, 2017
80
April, 2019
77
February, 2023
74
October, 2018
July, 2019
48
December, 2017
40
March, 2020
40
November, 2019
38
May, 2021
26
November, 2018
25
February, 2020
22
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
3
December, 2019
2
January, 2018
2
May, 2022
1
August, 2022
1
May, 2023
Available data
1818
bam
1648
bigWig
1028
tsv
835
bed narrowPeak
559
bigBed narrowPeak
351
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
94
txt
11
bed bedMethyl
11
bigBed bedMethyl
9
bedpe bed3+
9
hic
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2340
Homo sapiens
Biosample type
2348
tissue
615
cell line
493
primary cell
340
in vitro differentiated cells
8
stem cell
Organ
537
connective tissue
478
adipose tissue
436
pancreas
313
liver
254
brain
253
heart
158
bone element
126
blood vessel
126
vasculature
117
limb
106
kidney
75
musculature of body
72
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2344
AMP
4
T1D
Genome assembly (visualization)
1680
GRCh38
1652
hg19
Lab
2348
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
small RNA-seq
month_released!
July, 2019
BIOSAMPLE
ASSAY
2348 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
Hi-C
RRBS
snDrop-seq
FAIRE-seq
snATAC-seq
tissue
islet of Langerhans
286
71
1
34
4
1
1
1
adipose tissue
382
2
3
1
3
liver
145
145
2
1
1
3
1
1
bone element
84
heart left ventricle
1
35
3
18
1
1
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