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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
455
total RNA-seq
74
ChIP-seq
6
WGBS
5
ATAC-seq
2
DNase-seq
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
455
Transcription
74
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
33
histone
33
histone modification
24
control
20
broad histone mark
17
transcription factor
13
narrow histone mark
5
RNA binding protein
Date released
444
February, 2021
57
August, 2017
23
October, 2018
8
July, 2019
2
February, 2020
2
October, 2019
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
November, 2019
1
October, 2017
Available data
495
bam
479
bigWig
455
tsv
43
fastq
12
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
543
Homo sapiens
Biosample type
544
tissue
97
in vitro differentiated cells
38
primary cell
1
stem cell
Organ
544
connective tissue
485
adipose tissue
464
pancreas
358
liver
312
heart
298
kidney
261
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
81
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
544
AMP
Genome assembly (visualization)
479
hg19
477
GRCh38
Lab
544
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_title!
small RNA-seq
month_released!
November, 2019
BIOSAMPLE
ASSAY
544 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
2
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