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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
93
single cell RNA-seq
51
ATAC-seq
27
DNase-seq
19
total RNA-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
small RNA-seq
Assay category
123
DNA binding
112
Transcription
78
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
57
April, 2019
44
February, 2023
40
May, 2024
27
June, 2019
21
May, 2019
19
July, 2019
8
February, 2021
8
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
Available data
181
bed narrowPeak
156
bigWig
139
bam
110
tsv
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
4
bed bed3
4
txt
3
bedpe bed3+
3
hic
Organism
328
Homo sapiens
Biosample type
328
tissue
66
cell line
13
primary cell
1
in vitro differentiated cells
Organ
545
connective tissue
503
pancreas
486
adipose tissue
358
liver
312
heart
298
kidney
261
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
81
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
328
AMP
Genome assembly (visualization)
198
GRCh38
124
hg19
Lab
288
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
328 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
RRBS
tissue
heart left ventricle
35
18
2
3
3
4
1
1
1
left cardiac atrium
40
18
1
coronary artery
5
36
2
1
heart
14
1
18
4
1
1
heart right ventricle
13
17
1
1
2
1
1
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