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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
2
DNase-seq
2
Hi-C
1
pCHi-C
Assay category
17
DNA binding
2
3D chromatin structure
2
DNA accessibility
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
20
October, 2019
2
March, 2020
Available data
20
bam
15
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
tar
1
tsv
Organism
22
Homo sapiens
Biosample type
21
primary cell
1
tissue
Organ
944
pancreas
785
liver
681
connective tissue
523
epithelium
488
adipose tissue
392
heart
353
kidney
282
brain
235
vasculature
229
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
22
AMP
Genome assembly (visualization)
16
hg19
12
GRCh38
Lab
22
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
small RNA-seq
files.file_type!
tar
BIOSAMPLE
ASSAY
22 results
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ChIP-seq
DNase-seq
Hi-C
pCHi-C
primary cell
endothelial cell of umbilical vein
17
2
2
tissue
sigmoid colon
1
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