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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
44
total RNA-seq
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
120
DNA binding
47
Transcription
27
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
26
control
5
RNA binding protein
5
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
168
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
64
March, 2020
61
November, 2019
49
April, 2018
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
184
bam
164
bigWig
104
bed narrowPeak
99
bigBed narrowPeak
47
tsv
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
210
Homo sapiens
Biosample type
176
tissue
34
primary cell
Organ
62
vasculature
61
blood vessel
45
heart
42
brain
18
epithelium
15
connective tissue
15
kidney
15
musculature of body
12
limb
9
adipose tissue
8
artery
7
liver
6
pancreas
2
pericardium
1
eye
Project
210
AMP
Genome assembly (visualization)
170
hg19
157
GRCh38
Lab
210
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
assay_title!
small RNA-seq
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
210 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
thoracic aorta
16
2
1
ascending aorta
16
1
temporal lobe
15
1
aorta
13
2
angular gyrus
13
+ See 27 more…
primary cell
kidney epithelial cell
5
1
1
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
renal cortical epithelial cell
1
1
Purkinje cell
1
+ See 20 more…
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