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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
226
ChIP-seq
38
ATAC-seq
29
DNase-seq
1
FAIRE-seq
Assay category
226
DNA binding
68
DNA accessibility
Target of assay
216
histone
216
histone modification
112
broad histone mark
104
narrow histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
127
May, 2021
47
June, 2019
46
September, 2018
33
August, 2017
21
October, 2019
6
November, 2017
5
September, 2017
4
May, 2019
3
August, 2021
2
November, 2020
Available data
611
bigWig
607
bam
409
fastq
295
bed narrowPeak
268
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
bed bed3
1
tar
Organism
294
Homo sapiens
Biosample type
984
tissue
403
cell line
294
primary cell
132
in vitro differentiated cells
2
stem cell
Organ
106
epithelium
68
pancreas
22
kidney
21
vasculature
17
blood vessel
16
connective tissue
13
vein
11
brain
9
musculature of body
6
heart
6
liver
3
eye
Project
210
AMP
84
T1D
Genome assembly (visualization)
287
hg19
260
GRCh38
Lab
180
AMP-T2D consortium
114
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
small RNA-seq
files.file_type!
bed bed3
BIOSAMPLE
ASSAY
294 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
30
pancreatic ductal cell
13
4
skeletal muscle myoblast
14
2
pancreatic beta cell
7
7
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