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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
709
ChIP-seq
177
DNase-seq
43
ATAC-seq
16
WGBS
small RNA-seq
4
FAIRE-seq
Assay category
901
Transcription
709
DNA binding
224
DNA accessibility
16
DNA methylation
Target of assay
564
histone modification
563
histone
285
narrow histone mark
278
broad histone mark
93
transcription factor
52
control
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
211
August, 2017
193
May, 2020
169
October, 2019
163
June, 2019
116
July, 2018
93
May, 2019
78
November, 2017
65
April, 2019
47
July, 2019
45
October, 2018
40
May, 2024
38
May, 2021
36
December, 2017
23
November, 2018
22
October, 2017
20
May, 2022
19
November, 2019
11
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
January, 2018
Available data
1891
bam
1756
bigWig
1060
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1843
Homo sapiens
Biosample type
1850
tissue
612
primary cell
525
cell line
281
in vitro differentiated cells
3
stem cell
Organ
486
connective tissue
428
adipose tissue
375
pancreas
305
liver
234
brain
156
heart
91
limb
90
kidney
70
blood vessel
70
vasculature
58
bone element
58
musculature of body
31
nerve
27
artery
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
1848
AMP
2
T1D
Genome assembly (visualization)
1697
GRCh38
1631
hg19
Lab
1789
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
1850 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
FAIRE-seq
tissue
adipose tissue
381
1
2
2
islet of Langerhans
266
32
1
3
1
liver
147
125
2
20
bone tissue
58
left cardiac atrium
40
1
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