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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
DNase-seq
56
single cell RNA-seq
27
ChIP-seq
11
ATAC-seq
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
RRBS
small RNA-seq
1
total RNA-seq
Assay category
80
DNA accessibility
57
Transcription
27
DNA binding
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
August, 2021
68
June, 2019
47
September, 2023
23
April, 2019
14
May, 2023
8
February, 2021
4
October, 2019
3
December, 2019
3
July, 2019
Available data
97
bam
90
bigWig
89
bed narrowPeak
87
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
11
tsv
5
csv
5
txt
1
bed bedMethyl
1
bigBed bedMethyl
Organism
170
Homo sapiens
Biosample type
170
tissue
36
primary cell
17
cell line
Organ
544
connective tissue
501
pancreas
485
adipose tissue
358
liver
261
brain
220
heart
170
kidney
158
bone element
127
blood vessel
127
vasculature
122
limb
81
musculature of body
71
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
123
AMP
47
KPMP
Genome assembly (visualization)
100
GRCh38
90
hg19
Lab
109
AMP-T2D consortium
47
KPMP
14
Katalin Susztak, Upenn
Audit category:
7
audit script error
assay_title!
small RNA-seq
month_released!
August, 2021
BIOSAMPLE
ASSAY
170 results
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DNase-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
snDrop-seq
RNA microarray
FAIRE-seq
RRBS
total RNA-seq
tissue
kidney
13
56
27
11
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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