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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
total RNA-seq
51
single cell RNA-seq
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
2
FAIRE-seq
Assay category
215
Transcription
27
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
3
control
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
231
bigWig
228
bam
211
tsv
50
fastq
23
bed bedMethyl
23
bigBed bedMethyl
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
258
Homo sapiens
Biosample type
181
tissue
77
primary cell
Organ
161
pancreas
46
epithelium
24
heart
17
connective tissue
14
brain
12
vasculature
11
blood vessel
10
kidney
9
adipose tissue
8
musculature of body
7
liver
5
limb
3
artery
2
pericardium
1
eye
Project
258
AMP
Genome assembly (visualization)
237
hg19
225
GRCh38
Lab
258
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
assay_title!
small RNA-seq
month_released!
May, 2020
BIOSAMPLE
ASSAY
258 results
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total RNA-seq
single cell RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
120
1
heart left ventricle
2
1
4
2
gastrocnemius medialis
4
omental fat pad
4
subcutaneous adipose tissue
4
+ See 25 more…
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
pancreatic cell
3
+ See 35 more…
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