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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
33
DNase-seq
4
total RNA-seq
small RNA-seq
1
WGBS
Assay category
67
DNA binding
33
DNA accessibility
4
Transcription
1
DNA methylation
Target of assay
51
transcription factor
14
histone
14
histone modification
10
RNA binding protein
10
chromatin remodeller
8
broad histone mark
6
narrow histone mark
Date released
41
June, 2019
27
December, 2018
15
January, 2019
12
November, 2018
5
May, 2019
3
July, 2019
2
March, 2020
Available data
105
bam
105
bigWig
100
bed narrowPeak
100
bigBed narrowPeak
54
fastq
33
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
4
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
105
Homo sapiens
Biosample type
54
cell line
41
tissue
10
primary cell
Organ
633
pancreas
563
connective tissue
528
liver
421
adipose tissue
294
epithelium
265
heart
213
brain
204
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
51
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
105
AMP
Genome assembly (visualization)
126
hg19
105
GRCh38
Lab
105
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
inconsistent control
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
105 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
WGBS
cell line
GM12878
54
tissue
muscle of leg
5
13
1
muscle of arm
17
psoas muscle
2
forelimb muscle
1
hindlimb muscle
1
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primary cell
skeletal muscle satellite cell
7
1
skeletal muscle cell
1
1
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