Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
total RNA-seq
19
ATAC-seq
6
MeRIP-seq
3
ChIP-seq
2
Capture-C
1
DNase-seq
1
Hi-C
Assay category
34
Transcription
20
DNA accessibility
3
DNA binding
1
3D chromatin structure
Target of assay
12
histone
histone modification
6
broad histone mark
6
narrow histone mark
5
control
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
20
May, 2021
6
November, 2019
6
November, 2020
4
March, 2020
2
August, 2021
2
October, 2019
Available data
39
bam
38
bigWig
35
tsv
3
bed narrowPeak
1
bedpe bed3+
1
bigBed narrowPeak
1
hic
Organism
66
Homo sapiens
Biosample type
340
primary cell
66
cell line
15
tissue
9
in vitro differentiated cells
Organ
383
liver
72
pancreas
66
artery
66
blood vessel
66
epithelium
66
heart
66
vasculature
60
blood
60
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
64
AMP
2
T1D
Genome assembly (visualization)
40
hg19
37
GRCh38
Lab
60
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
64
inconsistent ontology term
assay_title!
small RNA-seq
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
66 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
MeRIP-seq
ChIP-seq
Capture-C
DNase-seq
Hi-C
cell line
EndoC_BH1
33
19
6
3
2
1
glomerular visceral epithelial cell
1
1
Download