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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ATAC-seq
9
total RNA-seq
4
DNase-seq
3
ChIP-seq
1
RRBS
Assay category
43
DNA accessibility
9
Transcription
3
DNA binding
1
DNA methylation
Target of assay
1
RNA binding protein
1
control
1
histone
1
histone modification
1
narrow histone mark
1
transcription factor
Date released
39
February, 2023
October, 2019
8
February, 2021
7
June, 2019
1
February, 2020
1
July, 2019
Available data
41
bed narrowPeak
15
bam
6
bigBed narrowPeak
6
bigWig
5
tsv
4
bed bed3
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
txt
1
bed bedMethyl
1
bigBed bedMethyl
Organism
56
Homo sapiens
Biosample type
51
tissue
5
primary cell
Organ
926
pancreas
781
liver
677
connective tissue
489
epithelium
487
adipose tissue
384
heart
323
kidney
196
brain
189
vasculature
183
blood vessel
159
bone element
115
artery
94
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
56
AMP
Genome assembly (visualization)
46
hg19
14
GRCh38
Lab
56
AMP-T2D consortium
assay_title!
small RNA-seq
month_released!
October, 2019
BIOSAMPLE
ASSAY
56 results
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ATAC-seq
total RNA-seq
DNase-seq
ChIP-seq
RRBS
tissue
retina
15
3
3
pigmented layer of retina
12
2
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
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primary cell
retinal pigment epithelial cell
1
3
1
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