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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
ChIP-seq
37
DNase-seq
29
ATAC-seq
25
total RNA-seq
6
Hi-C
6
RRBS
5
pCHi-C
small RNA-seq
1
WGBS
1
single cell RNA-seq
Assay category
66
DNA accessibility
44
DNA binding
26
Transcription
7
DNA methylation
6
3D chromatin structure
Target of assay
36
histone
36
histone modification
20
broad histone mark
16
narrow histone mark
7
control
1
RNA binding protein
1
transcription factor
Date released
50
June, 2019
31
February, 2023
26
August, 2017
21
October, 2019
9
July, 2019
7
May, 2019
5
March, 2020
3
February, 2020
1
January, 2018
1
May, 2022
Available data
93
bed narrowPeak
72
bigWig
62
bam
53
bigBed narrowPeak
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
15
tagAlign
12
tsv
5
bed bedMethyl
5
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
txt
Organism
154
Homo sapiens
Biosample type
136
tissue
18
primary cell
Organ
938
pancreas
788
liver
681
connective tissue
524
epithelium
488
adipose tissue
392
heart
291
kidney
282
brain
236
vasculature
230
blood vessel
141
artery
122
limb
93
musculature of body
71
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
154
AMP
Genome assembly (visualization)
104
hg19
57
GRCh38
Lab
154
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
assay_title!
small RNA-seq
files.file_type!
txt
BIOSAMPLE
ASSAY
154 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
RRBS
pCHi-C
WGBS
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
1
4
1
islet of Langerhans
2
1
14
4
muscle of leg
7
13
1
retina
3
15
3
muscle of arm
17
+ See 6 more…
primary cell
skeletal muscle satellite cell
8
1
retinal pigment epithelial cell
3
1
1
skeletal muscle cell
2
1
1
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