Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
89
ChIP-seq
69
total RNA-seq
47
ATAC-seq
27
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
small RNA-seq
Assay category
162
Transcription
89
DNA binding
74
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
18
control
11
transcription factor
5
RNA binding protein
Date released
92
August, 2021
66
February, 2021
57
April, 2019
36
February, 2023
27
June, 2019
21
July, 2019
21
May, 2019
8
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
Available data
199
bam
174
bigWig
164
tsv
145
bed narrowPeak
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
340
Homo sapiens
Biosample type
272
tissue
66
cell line
2
primary cell
Organ
944
pancreas
788
liver
connective tissue
524
epithelium
488
adipose tissue
353
kidney
352
heart
282
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
340
AMP
Genome assembly (visualization)
216
GRCh38
178
hg19
Lab
340
AMP-T2D consortium
assay_title!
small RNA-seq
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
340 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
tissue
heart left ventricle
18
35
3
2
3
4
1
1
1
coronary artery
5
1
36
2
heart
1
14
4
18
1
1
heart right ventricle
17
13
1
1
2
1
1
right cardiac atrium
18
6
1
1
+ See 10 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
See all biosamples
Download