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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
total RNA-seq
5
STARR-seq
3
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
14
DNA binding
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
11
transcription factor
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
22
August, 2021
2
March, 2019
Available data
14
bed narrowPeak
14
bigWig
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
24
Homo sapiens
Biosample type
21
cell line
3
tissue
Organ
18
liver
3
pancreas
2
kidney
Project
24
AMP
Genome assembly (visualization)
17
hg19
1
GRCh38
Lab
2321
AMP-T2D consortium
232
Klaus Kaestner, Upenn
220
Kyle Gaulton, UCSD
93
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
24
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
5
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_title!
small RNA-seq
total RNA-seq
target.investigated_as!
control
BIOSAMPLE
ASSAY
24 results
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ChIP-seq
STARR-seq
Hi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
14
2
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
2
1
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