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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
237
total RNA-seq
134
single cell RNA-seq
61
ATAC-seq
snATAC-seq
17
WGBS
12
DNase-seq
5
GRO-seq
4
RRBS
2
FAIRE-seq
1
Hi-C
1
pCHi-C
Assay category
371
Transcription
75
DNA accessibility
21
DNA methylation
1
3D chromatin structure
Date released
106
August, 2017
76
February, 2023
50
July, 2018
44
April, 2018
41
September, 2018
41
September, 2020
24
May, 2022
18
February, 2021
18
November, 2018
15
February, 2018
8
October, 2017
7
August, 2020
5
January, 2018
5
January, 2019
5
September, 2017
4
August, 2018
3
June, 2018
2
October, 2018
1
December, 2018
1
March, 2019
Available data
1814
bam
1779
bigWig
1600
tsv
492
bed narrowPeak
474
fastq
241
bigBed narrowPeak
219
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
160
txt
132
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
474
Homo sapiens
Biosample type
288
primary cell
157
tissue
21
in vitro differentiated cells
7
cell line
1
stem cell
Organ
324
pancreas
185
epithelium
13
liver
11
connective tissue
7
adipose tissue
5
embryo
4
spleen
3
brain
2
musculature of body
Project
332
AMP
142
HPAP
Genome assembly (visualization)
304
hg19
299
GRCh38
5
hg18
Lab
306
AMP-T2D consortium
142
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
7
inconsistent ontology term
assay_title!
snATAC-seq
ChIP-seq
CRISPR genome editing followed by sgRNA sequencing
BIOSAMPLE
ASSAY
474 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
DNase-seq
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
primary cell
pancreatic alpha cell
52
12
13
6
pancreatic beta cell
21
12
10
exocrine cell
39
Langerhans cell
34
pancreatic acinar cell
4
9
5
+ See 14 more…
tissue
islet of Langerhans
97
6
20
1
1
body of pancreas
4
2
2
liver
1
2
1
spleen
1
2
1
adipose tissue
3
+ See 7 more…
in vitro differentiated cells
pancreatic endoderm
4
1
definitive endodermal cell
2
1
primitive gut cell
2
1
embryonic stem cell
2
endocrine cell
2
+ See 5 more…
cell line
HepG2
5
1
1
stem cell
hESC
1
See all biosamples
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