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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
ChIP-seq
5
Hi-C
4
ATAC-seq
2
Capture-C
2
pCHi-C
2
total RNA-seq
snATAC-seq
Assay category
5
3D chromatin structure
4
DNA accessibility
2
Transcription
Date released
4
February, 2023
4
July, 2019
2
August, 2021
2
February, 2021
2
May, 2021
1
October, 2019
Available data
1605
bam
1600
tsv
1570
bigWig
462
fastq
283
bed narrowPeak
160
txt
132
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
32
bigBed narrowPeak
23
bedpe bed3+
23
hic
15
bed bed3+
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
bed broadPeak
2
ibed
1
bedpe
1
tar
1
vcf
Organism
15
Homo sapiens
Biosample type
7
primary cell
6
in vitro differentiated cells
2
cell line
Organ
8
connective tissue
3
brain
2
blood vessel
2
epithelium
2
liver
2
vasculature
1
pancreas
Project
15
AMP
Genome assembly (visualization)
15
hg19
1
GRCh38
Lab
11
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_title!
snATAC-seq
ChIP-seq
DNase-seq
BIOSAMPLE
ASSAY
15 results
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Hi-C
ATAC-seq
Capture-C
pCHi-C
total RNA-seq
primary cell
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
+ See 1 more…
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
cell line
HepG2
1
Panc1
1
See all biosamples
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