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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
single cell RNA-seq
41
WGBS
39
ATAC-seq
snATAC-seq
Assay category
60
Transcription
41
DNA methylation
39
DNA accessibility
Date released
113
May, 2022
19
September, 2020
6
February, 2021
1
November, 2018
1
September, 2018
Available data
1814
bam
1779
bigWig
1600
tsv
492
bed narrowPeak
474
fastq
241
bigBed narrowPeak
219
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
160
txt
132
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
140
Homo sapiens
Biosample type
134
primary cell
6
tissue
Organ
80
epithelium
80
pancreas
5
kidney
1
liver
Project
132
HPAP
8
AMP
Lab
132
Klaus Kaestner, Upenn
8
AMP-T2D consortium
Audit category:
5
audit script error
assay_title!
snATAC-seq
ChIP-seq
BIOSAMPLE
ASSAY
140 results
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single cell RNA-seq
WGBS
ATAC-seq
primary cell
Langerhans cell
52
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
pancreatic cell
2
tissue
kidney
5
liver
1
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