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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1016
total RNA-seq
ChIP-seq
221
ATAC-seq
151
DNase-seq
87
RNA microarray
87
single cell RNA-seq
snATAC-seq
22
pCHi-C
19
WGBS
15
small RNA-seq
13
Hi-C
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1118
Transcription
376
DNA accessibility
29
DNA methylation
13
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
545
February, 2021
143
May, 2020
136
June, 2019
131
August, 2021
120
July, 2018
108
August, 2017
65
May, 2022
57
February, 2023
57
July, 2019
47
September, 2023
44
October, 2019
40
November, 2019
38
May, 2021
31
March, 2020
22
February, 2020
16
November, 2018
15
May, 2023
9
April, 2020
8
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
Available data
1135
bam
1107
bigWig
965
tsv
323
bed narrowPeak
157
bigBed narrowPeak
157
fastq
156
txt
151
bed broadPeak
149
bed bed3+
149
bigBed broadPeak
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1651
Homo sapiens
Biosample type
1652
tissue
745
primary cell
195
in vitro differentiated cells
118
cell line
7
stem cell
Organ
473
connective tissue
415
adipose tissue
377
pancreas
266
kidney
206
liver
heart
158
bone element
60
blood vessel
60
vasculature
56
brain
56
limb
54
eye
52
musculature of body
45
artery
18
ureter
16
skeleton
15
epithelium
10
lung
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1577
AMP
47
KPMP
19
T1D
9
LungMap
Genome assembly (visualization)
1184
GRCh38
1179
hg19
Lab
1366
AMP-T2D consortium
136
Katalin Susztak, Upenn
47
KPMP
42
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
9
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
7
audit script error
assay_title!
snATAC-seq
ChIP-seq
organ_slims!
heart
BIOSAMPLE
ASSAY
1652 results
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total RNA-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
3
1
3
islet of Langerhans
292
68
1
6
4
3
1
1
4
kidney
49
75
13
64
1
1
1
liver
167
20
2
1
1
3
1
1
1
bone element
84
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