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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
snATAC-seq
1
ATAC-seq
1
total RNA-seq
Assay category
60
DNA binding
1
DNA accessibility
1
Transcription
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
27
December, 2018
18
January, 2019
15
November, 2018
1
February, 2020
1
January, 2018
Available data
60
bam
60
fastq
55
bigWig
54
bed narrowPeak
54
bigBed narrowPeak
1
tsv
Organism
62
Homo sapiens
Biosample type
61
cell line
1
tissue
Organ
935
pancreas
790
liver
678
connective tissue
524
epithelium
491
adipose tissue
393
heart
348
kidney
285
brain
236
vasculature
230
blood vessel
155
bone element
141
artery
122
limb
95
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
12
skeleton
10
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
62
AMP
Genome assembly (visualization)
55
hg19
54
GRCh38
Lab
62
AMP-T2D consortium
Audit category:
1
inconsistent control
assay_title!
snATAC-seq
files.file_type!
bed bed3
BIOSAMPLE
ASSAY
62 results
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ChIP-seq
ATAC-seq
total RNA-seq
cell line
GM12878
60
1
tissue
C1 segment of cervical spinal cord
1
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