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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
snATAC-seq
Assay category
26
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
1
DNA accessibility
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
6
control
Date released
13
August, 2017
10
July, 2019
10
June, 2019
7
May, 2019
5
March, 2020
2
February, 2020
1
January, 2018
1
May, 2022
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
bed broadPeak
33
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
49
Homo sapiens
Biosample type
36
tissue
13
primary cell
Organ
762
pancreas
728
liver
674
connective tissue
488
adipose tissue
363
heart
350
epithelium
270
kidney
239
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
61
blood
61
bodily fluid
57
eye
49
musculature of body
41
nerve
37
embryo
24
spleen
18
vein
16
skeleton
10
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
49
AMP
Genome assembly (visualization)
26
hg19
20
GRCh38
Lab
49
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
assay_title!
snATAC-seq
files.file_type!
bed broadPeak
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
9
1
4
1
1
1
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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