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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
ChIP-seq
89
total RNA-seq
5
ATAC-seq
2
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
132
DNA binding
89
Transcription
8
DNA accessibility
2
DNA methylation
Target of assay
86
histone modification
85
histone
45
narrow histone mark
45
transcription factor
39
broad histone mark
6
RNA binding protein
2
chromatin remodeller
1
control
Date released
551
February, 2021
303
May, 2021
264
November, 2017
260
May, 2020
231
August, 2017
198
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
72
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
49
April, 2018
47
August, 2021
47
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
23
June, 2019
20
March, 2020
20
May, 2022
10
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
September, 2017
4
November, 2020
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
287
fastq
282
bam
272
bigWig
142
bed narrowPeak
89
tsv
85
tagAlign
42
bigBed narrowPeak
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
231
Homo sapiens
Biosample type
152
tissue
47
in vitro differentiated cells
32
primary cell
Organ
147
pancreas
63
connective tissue
18
liver
17
epithelium
16
adipose tissue
Project
231
AMP
Genome assembly (visualization)
229
hg19
228
GRCh38
Lab
231
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_title!
snATAC-seq
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
231 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
21
89
1
1
liver
17
white adipose tissue
12
pancreas
6
adipose tissue
1
2
+ See 2 more…
in vitro differentiated cells
adipocyte
47
primary cell
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
skeletal muscle myoblast
2
1
pancreatic acinar cell
1
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