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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
snATAC-seq
Assay category
19
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
1
DNA accessibility
Target of assay
33
histone
33
histone modification
broad histone mark
13
narrow histone mark
6
control
Date released
14
August, 2017
10
July, 2019
6
June, 2019
5
March, 2020
3
May, 2019
2
February, 2020
1
January, 2018
1
May, 2022
Available data
52
bigWig
49
bam
44
bed narrowPeak
39
bigBed narrowPeak
38
bed broadPeak
33
bed bed3+
bigBed broadPeak
9
tsv
7
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
42
Homo sapiens
Biosample type
33
tissue
9
primary cell
Organ
850
pancreas
694
liver
631
connective tissue
469
adipose tissue
460
epithelium
306
heart
255
kidney
178
brain
176
vasculature
174
blood vessel
159
bone element
123
artery
61
blood
61
bodily fluid
57
eye
52
limb
42
musculature of body
33
embryo
25
nerve
20
spleen
16
skeleton
11
vein
10
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
42
AMP
Genome assembly (visualization)
23
hg19
12
GRCh38
Lab
42
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
assay_title!
snATAC-seq
files.file_type!
bigBed broadPeak
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
10
1
4
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
muscle of leg
3
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
4
1
1
skeletal muscle cell
2
1
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