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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
single cell RNA-seq
99
total RNA-seq
snATAC-seq
50
ATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
244
Transcription
50
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Date released
113
May, 2022
97
February, 2023
56
September, 2020
47
September, 2023
18
February, 2021
17
May, 2021
9
April, 2020
5
March, 2023
3
October, 2022
2
March, 2020
Available data
bigWig
186
bam
142
fastq
132
zippedFastqFolder
104
tsv
88
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
363
Homo sapiens
Biosample type
283
primary cell
75
tissue
7
cell line
2
stem cell
Organ
160
pancreas
142
epithelium
47
kidney
9
lung
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
266
HPAP
47
KPMP
40
T1D
9
LungMap
4
community
1
ITG
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
266
Klaus Kaestner, Upenn
47
KPMP
38
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
AMP-T2D consortium
1
ITG
Audit category:
3
audit script error
1
inconsistent ontology term
assay_title!
snATAC-seq
files.file_type!
bigWig
award.project!
AMP
BIOSAMPLE
ASSAY
367 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
pancreatic alpha cell
42
22
31
1
Langerhans cell
85
pancreatic beta cell
11
13
16
1
exocrine cell
39
pancreatic acinar cell
4
1
+ See 16 more…
tissue
kidney
47
islet of Langerhans
7
11
lung
9
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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