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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
298
ChIP-seq
Assay category
298
DNA binding
Target of assay
223
histone
223
histone modification
127
narrow histone mark
96
broad histone mark
66
control
9
transcription factor
Date released
78
November, 2017
73
August, 2017
50
May, 2020
49
October, 2019
20
August, 2021
14
October, 2017
8
February, 2021
6
May, 2021
Available data
2783
bam
2516
bigWig
1482
bed narrowPeak
1330
tsv
949
fastq
933
bigBed narrowPeak
298
tagAlign
273
bed broadPeak
236
bigBed broadPeak
235
bed bed3+
160
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
291
Homo sapiens
Biosample type
238
tissue
primary cell
40
in vitro differentiated cells
20
cell line
Organ
118
brain
82
liver
22
connective tissue
19
pancreas
15
musculature of body
8
adipose tissue
6
artery
6
blood vessel
6
heart
6
vasculature
3
epithelium
1
pituitary gland
Project
298
AMP
Genome assembly (visualization)
148
GRCh38
139
hg19
Lab
298
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
assay_title!
snATAC-seq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
298 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 43 more…
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
cell line
HepG2
12
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
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