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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
146
ChIP-seq
115
total RNA-seq
34
ATAC-seq
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
146
DNA binding
115
Transcription
34
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
control
5
RNA binding protein
Date released
227
May, 2021
45
May, 2020
24
May, 2022
21
February, 2023
Available data
217
bigWig
204
bam
132
bed narrowPeak
96
tsv
84
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
317
Homo sapiens
Biosample type
228
primary cell
42
in vitro differentiated cells
42
tissue
5
cell line
Organ
41
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
218
T1D
99
AMP
Genome assembly (visualization)
235
hg19
180
GRCh38
Lab
3584
AMP-T2D consortium
317
Kyle Gaulton, UCSD
276
Klaus Kaestner, Upenn
136
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
34
Bing Ren, UCSD
9
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
5
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
assay_title!
snATAC-seq
target.investigated_as!
control
BIOSAMPLE
ASSAY
317 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
30
4
1
B cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 30 more…
in vitro differentiated cells
embryonic stem cell
32
5
5
tissue
islet of Langerhans
11
29
pancreas
1
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
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