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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
total RNA-seq
34
ATAC-seq
20
ChIP-seq
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
115
Transcription
34
DNA accessibility
20
DNA binding
Target of assay
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
101
May, 2021
45
May, 2020
24
May, 2022
21
February, 2023
Available data
120
bam
106
bigWig
96
tsv
24
fastq
18
bed narrowPeak
6
txt
2
bed bed3+
Organism
191
Homo sapiens
Biosample type
117
primary cell
42
tissue
27
in vitro differentiated cells
5
cell line
Organ
41
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
134
T1D
57
AMP
Genome assembly (visualization)
124
hg19
96
GRCh38
Lab
3066
AMP-T2D consortium
276
Klaus Kaestner, Upenn
191
Kyle Gaulton, UCSD
136
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
35
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
assay_title!
snATAC-seq
target.investigated_as!
histone
BIOSAMPLE
ASSAY
191 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
1
CD8-positive, alpha-beta T cell
4
3
1
B cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
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tissue
islet of Langerhans
11
29
pancreas
1
thymus
1
in vitro differentiated cells
embryonic stem cell
5
5
17
cell line
EndoC_BH1
3
2
See all biosamples
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