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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
754
ChIP-seq
634
total RNA-seq
254
ATAC-seq
180
single cell RNA-seq
176
DNase-seq
86
RNA microarray
snATAC-seq
24
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
828
Transcription
754
DNA binding
434
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
536
histone modification
535
histone
289
narrow histone mark
246
broad histone mark
149
control
71
transcription factor
19
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
241
October, 2019
227
August, 2017
222
August, 2021
193
May, 2020
162
June, 2019
159
February, 2021
120
July, 2018
115
May, 2019
92
February, 2023
82
November, 2017
April, 2019
67
July, 2019
65
May, 2022
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
March, 2020
39
November, 2019
25
November, 2018
23
February, 2020
22
October, 2017
14
May, 2023
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
January, 2018
Available data
1388
bam
1284
bigWig
906
bed narrowPeak
677
tsv
487
bigBed narrowPeak
334
fastq
230
tagAlign
210
bed broadPeak
198
bed bed3+
174
bigBed broadPeak
156
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2174
Homo sapiens
Biosample type
2181
tissue
1030
primary cell
662
cell line
393
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
494
pancreas
adipose tissue
361
liver
270
kidney
265
brain
256
heart
158
bone element
133
blood vessel
133
vasculature
122
limb
81
musculature of body
73
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
10
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2104
AMP
47
KPMP
21
T1D
9
LungMap
Genome assembly (visualization)
1373
GRCh38
1265
hg19
Lab
1855
AMP-T2D consortium
136
Katalin Susztak, Upenn
47
KPMP
42
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
9
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
snATAC-seq
month_released!
April, 2019
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
2181 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
71
292
68
6
1
4
3
1
1
4
liver
145
167
20
1
2
1
3
1
1
1
kidney
4
49
75
64
13
1
1
1
bone element
84
left cardiac atrium
40
18
1
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