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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
20
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
49
DNA accessibility
20
DNA binding
Target of assay
20
histone
20
histone modification
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
12
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
88
bam
71
bigWig
60
bed narrowPeak
58
tsv
11
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
127
Homo sapiens
Biosample type
66
cell line
59
tissue
2
primary cell
Organ
854
pancreas
749
liver
639
connective tissue
477
epithelium
470
adipose tissue
336
heart
333
kidney
216
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
75
musculature of body
61
blood
61
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
18
ureter
16
skeleton
13
vein
10
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
127
AMP
Genome assembly (visualization)
114
GRCh38
79
hg19
Lab
127
AMP-T2D consortium
assay_title!
snATAC-seq
month_released!
August, 2018
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
127 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
5
2
tibial artery
1
1
9
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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